PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do023267.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 434aa    MW: 46066.4 Da    PI: 5.2165
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do023267.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.32e-11247291554
                 HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 h + Er+RR+++N++f++Lr+llP++      K +K ++L  A  ++k L
  Do023267.1 247 HMMSERKRREKLNDSFHTLRSLLPPC-----SKKDKTTVLINAASFLKTL 291
                 7899*********************9.....6999********9999988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.14E-16240308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.437242291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-15247308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.33E-11247296No hitNo description
PfamPF000104.2E-9247292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.4E-12248297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MDEVWCDLDL QQLQAGLHPA PGLHDHDPFW SALADCAASF LAGDTACFGV ADIDLSGSAA  60
SGNVVVDGMD TSGFFAENDD HHQLMPHQEQ QPVYSSSSLS SRRSLSIDSG GSSSTFFQLD  120
DAAPALAAAT AAKTHFTSPH SHPAAPSTTT QDPFAGEDEA IMRAMMAVIS SASPSSSESS  180
SPPLSQDTTA AQPAVQPPRL ISGASGASHV TVRSSSLGAV APERTTSLSS AASGGRQQEN  240
NSSQVYHMMS ERKRREKLND SFHTLRSLLP PCSKKDKTTV LINAASFLKT LEAQVSELEE  300
KNTKLERYVP REDGGAATAA THRRAKVHIS RAASDEQQVT LMVMVMVECD IVDLVLHVLE  360
CLRWMSGVSV LSVDADTYSP QALLKARAHI KLQIMDGDCW NEALFHEAMT KAVHDATSPS  420
LSSCAAPVPL VAAA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1250255ERKRRE
2251256RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9570841e-177EU957084.1 Zea mays clone 1582425 helix-loop-helix DNA-binding domain containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969032.10.0PREDICTED: putative transcription factor bHLH041
TrEMBLK3XHX20.0K3XHX2_SETIT; Uncharacterized protein
STRINGSi001494m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101743136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.11e-24bHLH family protein